qbicsoftware/qbic-singularity-fastqc:latest

$ singularity pull shub://qbicsoftware/qbic-singularity-fastqc:latest

Singularity Recipe

Bootstrap:docker
From:java:openjdk-8-jre-alpine

%post
/bin/sh build.sh
mkdir -p /build
cd /build
wget https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.6.zip
unzip fastqc_v0.11.6.zip
mv FastQC/ /usr/bin/
ln -s /usr/bin/FastQC/fastqc /usr/bin/fastqc
chmod +x /usr/bin/fastqc

%files
#Installation of tool
build.sh

%environment
#Set your toolname here and the appropriate version to have this in the metadata of your container
FASTQC_VERSION=v0.11.6
LANG=en_US.UTF-8
FC_LANG=en-US
LC_CTYPE=en_US.UTF-8

%labels
Maintainer	alexander.peltzer@uni-tuebingen.de

Collection


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Metrics

key value
id /containers/qbicsoftware-qbic-singularity-fastqc-latest
collection name qbicsoftware/qbic-singularity-fastqc
branch master
tag latest
commit 72cf41fded6f4ed35f600c50a41a1e7f77f33ee9
version (container hash) 6386229e79c932e86baffe4c629ce8f1
build date 2020-07-09T16:50:15.998Z
size (MB) 434
size (bytes) 158945311
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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