qbicsoftware/qbic-singularity-fastqc:latest
$ singularity pull shub://qbicsoftware/qbic-singularity-fastqc:latest
Singularity Recipe
Bootstrap:docker
From:java:openjdk-8-jre-alpine
%post
/bin/sh build.sh
mkdir -p /build
cd /build
wget https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.6.zip
unzip fastqc_v0.11.6.zip
mv FastQC/ /usr/bin/
ln -s /usr/bin/FastQC/fastqc /usr/bin/fastqc
chmod +x /usr/bin/fastqc
%files
#Installation of tool
build.sh
%environment
#Set your toolname here and the appropriate version to have this in the metadata of your container
FASTQC_VERSION=v0.11.6
LANG=en_US.UTF-8
FC_LANG=en-US
LC_CTYPE=en_US.UTF-8
%labels
Maintainer alexander.peltzer@uni-tuebingen.de
Collection
- Name: qbicsoftware/qbic-singularity-fastqc
- License: MIT License
View on Datalad
Metrics
| key | value |
|---|---|
| id | /containers/qbicsoftware-qbic-singularity-fastqc-latest |
| collection name | qbicsoftware/qbic-singularity-fastqc |
| branch | master |
| tag | latest |
| commit | 72cf41fded6f4ed35f600c50a41a1e7f77f33ee9 |
| version (container hash) | 6386229e79c932e86baffe4c629ce8f1 |
| build date | 2020-07-09T16:50:15.998Z |
| size (MB) | 434 |
| size (bytes) | 158945311 |
| SIF | Download URL (please use pull with shub://) |
| Datalad URL | View on Datalad |
| Singularity Recipe | Singularity Recipe on Datalad |
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