psychoinformatics-de/cbbs-toolbox:heudiconv

$ singularity pull shub://psychoinformatics-de/cbbs-toolbox:heudiconv

Singularity Recipe

Bootstrap:docker
From:neurodebian:latest

%post
    echo "Configuring the environment"
    apt-get -y update

    # setup the container sources themselves
    apt-get -y install eatmydata
    # proper locale setup for UTF8
    eatmydata apt-get -y install locales
    echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen
    locale-gen

    # bare essentials to pull everything else in
    eatmydata apt-get -y install --no-install-recommends python3-pip python3-setuptools python3-wheel wget

    # non-python and a few other bits to avoid having to build everything
    eatmydata apt-get -y install --no-install-recommends dcm2niix python3-numpy python3-six python3-traits python3-scipy pigz

    # little dance to avoid having to install the entire git stack
    # fancified dcmstack version needed
    wget https://github.com/mvdoc/dcmstack/archive/bf/importsys.zip
    pip3 install --system importsys.zip
    rm -f importsys.zip

    wget https://github.com/nipy/heudiconv/archive/master.zip
    pip3 install --system master.zip
    rm -f master.zip

    # clean up
    apt-get clean

Collection

• Name: psychoinformatics-de/cbbs-toolbox
• License: None

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