prete/scanem-wip:latest

$ singularity pull shub://prete/scanem-wip:latest

Singularity Recipe

Bootstrap: docker
From: julia:1.2.0


%help
    Julia 1.2 docker image


%post
    JULIA_PKGDIR=/opt/julia
    JULIA_VERSION=1.2.0
    export JULIA_DEPOT_PATH=/opt/julia
    export JULIA_PATH=/usr/local/julia
    export PATH=$JULIA_PATH/bin:$PATH

    mkdir -p "$JULIA_DEPOT_PATH"

    julia -e 'using Pkg;pkg"add Dates Parsers PooledArrays WeakRefStrings FilePathsBase LazyArrays Libdl Mmap CategoricalArrays Missings InvertedIndices Tables TableTraits IteratorInterfaceExtensions DataAPI Unicode SortingAlgorithms Reexport TextWrap Compat Blosc ArgParse DataFrames CSV Profile Random Statistics HDF5;precompile"'

#    COMPILEFOLDER=/opt/julia/compiled/v1.2/
#
#    mkdir -p "$COMPILEFOLDER/ArgParse" && \
#    mkdir -p "$COMPILEFOLDER/HDF5" && \
#    mkdir -p "$COMPILEFOLDER/Profile" && \
#    mkdir -p "$COMPILEFOLDER/DataFrames" && \
#    mkdir -p "$COMPILEFOLDER/CSV" && \
#    mkdir -p "$COMPILEFOLDER/Statistics"
#
#    julia -e "Base.compilecache(Base.PkgId(\"ArgParse\"))" && \
#    julia -e "Base.compilecache(Base.PkgId(\"HDF5\"))" && \
#    julia -e "Base.compilecache(Base.PkgId(\"Profile\"))" && \
#    julia -e "Base.compilecache(Base.PkgId(\"DataFrames\"))" && \
#    julia -e "Base.compilecache(Base.PkgId(\"CSV\"))" && \
#    julia -e "Base.compilecache(Base.PkgId(\"Statistics\"))"

    chmod -R 777 /opt
    chmod -R 777 /usr/local/julia

%environment
    export JULIA_DEPOT_PATH=/opt/julia
    export JULIA_PKGDIR=/opt/julia
#    export COMPILEFOLDER=/opt/julia/compiled/v1.2/
#    export JULIA_LOAD_PATH=$COMPILEFOLDER:/usr/local/julia/share/julia/stdlib/v1.2
    export LC_ALL=C.UTF-8
    export LANG=C.UTF-8

julia --version


%runscript
    exec julia -e "$@"

Collection

• Name: prete/scanem-wip
• License: None

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