pranithavangala/singularity:r_packages

$ singularity pull shub://pranithavangala/singularity:r_packages

Singularity Recipe

BootStrap: shub
From: shub://pranithavangala/singularity:r-3-4-3

%labels

    AUTHOR Pranitha Vangala <pranitha.vangala@gmail.com>
    Version v1.0

%environment
    export SRC=/usr/local/src
    export BIN=/usr/local/bin
    export R_VERSION=R-3.4.3

%post
    	echo install.packages\(\"biclust\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
    	echo install.packages\(\"dplyr\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
    	echo install.packages\(\"reshape2\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
    	echo install.packages\(\"gplots\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
    	echo install.packages\(\"stringdist\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
    	echo install.packages\(\"stringr\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
    	echo install.packages\(\"data.table\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
    	R --slave -e 'source("http://bioconductor.org/biocLite.R");library(BiocInstaller); biocLite("Sushi", dep = TRUE)'
	echo install.packages\(\"readr\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
	echo install.packages\(\"purrr\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
	echo install.packages\(\"dplyr\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
	echo install.packages\(\"data.table\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
	echo install.packages\(\"caret\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
	echo install.packages\(\"h2o\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
	echo install.packages\(\"pROC\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
	echo install.packages\(\"PRROC\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
	echo install.packages\(\"parallel\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
	echo install.packages\(\"doParallel\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
	echo install.packages\(\"randomForest\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
	echo install.packages\(\"optparse\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave

Collection

• Name: pranithavangala/singularity
• License: None

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