powerPlant/stacks-srf:latest

$ singularity pull shub://powerPlant/stacks-srf:latest

Singularity Recipe

Bootstrap: docker
From: fedora:29

%labels
Maintainer tejas.sevak@plantandfood.co.nz
Version 2.2

%post
  ## Download build prerequisites
  dnf -y install gcc gcc-c++ libgomp make perl wget zlib-devel

  wget http://catchenlab.life.illinois.edu/stacks/source/stacks-2.2.tar.gz

  tar -xvf stacks-2.2.tar.gz
  cd stacks-2.2
  ./configure
  make
  make install
  
  ## Cleanup
  dnf -y remove wget zlib-devel
  dnf -y clean all
  rm -rf /stacks*

%runscript
if [ $# -eq 0 ]; then
  /bin/echo -e "This Singularity image cannot provide a single entrypoint. Please use \"$SINGULARITY_NAME <cmd>\" or \"singularity exec $SINGULARITY_NAME <cmd>\", where <cmd> is one of the following:\n"
  exec ls /usr/local/bin
else
  exec "$@"
fi

Collection

• Name: powerPlant/stacks-srf
• License: None

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