powerPlant/sga-srf:latest

$ singularity pull shub://powerPlant/sga-srf:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu:trusty

%labels
Maintainer @plantandfood.co.nz
Version 0.10.15

%post
  ## Download build prerequisites
  apt-get update
  DEBIAN_FRONTEND=noninteractive apt-get -y install automake autotools-dev build-essential cmake libhts-dev libjemalloc-dev libsparsehash-dev libz-dev python-matplotlib wget zlib1g-dev
  
  ## Build bamtools
  cd /opt
  wget https://github.com/pezmaster31/bamtools/archive/v2.4.0.tar.gz
  tar -xzvf v2.4.0.tar.gz
  rm -f v2.4.0.tar.gz
  cd bamtools-2.4.0
  mkdir build
  cd build
  cmake ..
  make

  ## Build SGA
  cd /opt
  wget https://github.com/jts/sga/archive/v0.10.15.tar.gz
  tar -xzvf v0.10.15.tar.gz
  rm -f v0.10.15.tar.gz
  cd sga-0.10.15/src
  ./autogen.sh
  ./configure --with-bamtools=/opt/bamtools-2.4.0 --with-jemalloc=/usr --prefix=/usr/local
  make
  make install

%runscript
  exec sga "$@"

Collection


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Metrics

key value
id /containers/powerPlant-sga-srf-latest
collection name powerPlant/sga-srf
branch master
tag latest
commit 99d433982b8db60122ee51c7613c3deef673a115
version (container hash) 9db152a2c67104a3577bb1668b40e04cea9dffc43c9804e0065b683689699b4d
build date 2020-01-17T03:38:37.848Z
size (MB) 177.859375
size (bytes) 186499072
SIF Download URL (please use pull with shub://)
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