powerPlant/sga-srf:latest
$ singularity pull shub://powerPlant/sga-srf:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:trusty
%labels
Maintainer @plantandfood.co.nz
Version 0.10.15
%post
## Download build prerequisites
apt-get update
DEBIAN_FRONTEND=noninteractive apt-get -y install automake autotools-dev build-essential cmake libhts-dev libjemalloc-dev libsparsehash-dev libz-dev python-matplotlib wget zlib1g-dev
## Build bamtools
cd /opt
wget https://github.com/pezmaster31/bamtools/archive/v2.4.0.tar.gz
tar -xzvf v2.4.0.tar.gz
rm -f v2.4.0.tar.gz
cd bamtools-2.4.0
mkdir build
cd build
cmake ..
make
## Build SGA
cd /opt
wget https://github.com/jts/sga/archive/v0.10.15.tar.gz
tar -xzvf v0.10.15.tar.gz
rm -f v0.10.15.tar.gz
cd sga-0.10.15/src
./autogen.sh
./configure --with-bamtools=/opt/bamtools-2.4.0 --with-jemalloc=/usr --prefix=/usr/local
make
make install
%runscript
exec sga "$@"
Collection
- Name: powerPlant/sga-srf
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/powerPlant-sga-srf-latest |
collection name | powerPlant/sga-srf |
branch | master |
tag | latest |
commit | 99d433982b8db60122ee51c7613c3deef673a115 |
version (container hash) | 9db152a2c67104a3577bb1668b40e04cea9dffc43c9804e0065b683689699b4d |
build date | 2020-01-17T03:38:37.848Z |
size (MB) | 177.859375 |
size (bytes) | 186499072 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.