powerPlant/salsa-srf:v2.2

$ singularity pull shub://powerPlant/salsa-srf:v2.2

Singularity Recipe

Bootstrap: docker
From: fedora:29

%labels
Maintainer tejas.sevak@plantandfood.co.nz
Version 2.2

%environment
 PATH=/opt/SALSA-2.2:$PATH
 export PATH

%post
  ## Install build prerequisites
  dnf -y install boost-devel gcc gcc-c++ libgomp make perl python2-networkx-core wget zlib-devel

  cd /opt
  wget https://github.com/machinegun/SALSA/archive/v2.2.tar.gz

  tar -xvf v2.2.tar.gz
  cd /opt/SALSA-2.2
  make
  chmod +x run_pipeline.py

  ## Cleanup
  dnf -y erase boost-devel gcc gcc-c++ wget zlib-devel

  ### Reinstall runtime dependencies
  dnf -y install boost
  dnf -y clean all
  rm -rf /opt/v2.2.tar.gz

%runscript
  exec python /opt/SALSA-2.2/run_pipeline.py "$@"

Collection


View on Datalad

Metrics

key value
id /containers/powerPlant-salsa-srf-v2.2
collection name powerPlant/salsa-srf
branch master
tag v2.2
commit 6e7b5933e9c73cad6db188ec787e770345bf858c
version (container hash) 6be7c440f5f51012c6c0ba0900364e00
build date 2019-02-05T05:54:32.614Z
size (MB) 580
size (bytes) 155484191
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.