powerPlant/salsa-srf:latest

$ singularity pull shub://powerPlant/salsa-srf:latest

Singularity Recipe

Bootstrap: docker
From: fedora:29

%labels
Maintainer tejas.sevak@plantandfood.co.nz
Version 2.2

%environment
 PATH=/opt/SALSA-2.2:$PATH
 export PATH

%post
  ## Install build prerequisites
  dnf -y install boost-devel gcc gcc-c++ libgomp make perl python2-networkx-core wget zlib-devel

  cd /opt
  wget https://github.com/machinegun/SALSA/archive/v2.2.tar.gz

  tar -xvf v2.2.tar.gz
  cd /opt/SALSA-2.2
  make
  chmod +x run_pipeline.py

  ## Cleanup
  dnf -y erase boost-devel gcc gcc-c++ wget zlib-devel

  ### Reinstall runtime dependencies
  dnf -y install boost
  dnf -y clean all
  rm -rf /opt/v2.2.tar.gz

%runscript
python /opt/SALSA-2.2/run_pipeline.py "$@"

Collection


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Metrics

key value
id /containers/powerPlant-salsa-srf-latest
collection name powerPlant/salsa-srf
branch master
tag latest
commit 69a2f2680392d6f7a2ac8f325a0aa4e83f3965a1
version (container hash) d7e01f97d32fcd13044e374a3d24e6b5
build date 2019-02-04T09:08:23.920Z
size (MB) 580
size (bytes) 155484191
SIF Download URL (please use pull with shub://)
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