powerPlant/salsa-srf:latest
$ singularity pull shub://powerPlant/salsa-srf:latest
Singularity Recipe
Bootstrap: docker
From: fedora:29
%labels
Maintainer tejas.sevak@plantandfood.co.nz
Version 2.2
%environment
PATH=/opt/SALSA-2.2:$PATH
export PATH
%post
## Install build prerequisites
dnf -y install boost-devel gcc gcc-c++ libgomp make perl python2-networkx-core wget zlib-devel
cd /opt
wget https://github.com/machinegun/SALSA/archive/v2.2.tar.gz
tar -xvf v2.2.tar.gz
cd /opt/SALSA-2.2
make
chmod +x run_pipeline.py
## Cleanup
dnf -y erase boost-devel gcc gcc-c++ wget zlib-devel
### Reinstall runtime dependencies
dnf -y install boost
dnf -y clean all
rm -rf /opt/v2.2.tar.gz
%runscript
python /opt/SALSA-2.2/run_pipeline.py "$@"
Collection
- Name: powerPlant/salsa-srf
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/powerPlant-salsa-srf-latest |
collection name | powerPlant/salsa-srf |
branch | master |
tag | latest |
commit | 69a2f2680392d6f7a2ac8f325a0aa4e83f3965a1 |
version (container hash) | d7e01f97d32fcd13044e374a3d24e6b5 |
build date | 2019-02-04T09:08:23.920Z |
size (MB) | 580 |
size (bytes) | 155484191 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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