powerPlant/repet-srf:latest

$ singularity pull shub://powerPlant/repet-srf:latest

Singularity Recipe

Bootstrap: docker
From: urgi/docker_vre_aio:v3.0

%environment
    export REPET_PATH="/usr/local/REPET_linux-x64-3.0"
    export PATH="/usr/local/REPET_linux-x64-3.0/bin:${PATH}"

%runscript
if [ -x $REPET_PATH/bin/$SINGULARITY_NAME ]; then
    exec $SINGULARITY_NAME "$@"
else
  /bin/echo -e "This Singularity image cannot provide a single entrypoint. Please use \"singularity exec $SINGULARITY_NAME <cmd>\", where <cmd> is one of the following:\n"
  exec ls $REPET_PATH/bin
fi

%help
    This assumes that $PATH below contains symlinks to the container image
    See https://github.com/powerPlant/README#dealing-with-multiple-entrypoints
%labels
    Author	Ben Warren <ben.warren@plantandfood.co.nz>
    Name	REPET
    Version	3.0

Collection

• Name: powerPlant/repet-srf
• License: None

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