powerPlant/ragoo-srf:latest

$ singularity pull shub://powerPlant/ragoo-srf:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu:bionic

%labels
Maintainer tejas.sevak@plantandfood.co.nz
Version 1.02

%environment
PATH=/opt/minimap2-2.15_x64-linux:$PATH
export PATH

%post
  ## Download build prerequisites
  apt-get -y update
  apt-get -y install python3 wget python3-pip python3-setuptools

  cd /opt
  wget https://github.com/lh3/minimap2/releases/download/v2.15/minimap2-2.15_x64-linux.tar.bz2
  tar -xvf minimap2-2.15_x64-linux.tar.bz2
  
  wget https://github.com/malonge/RaGOO/archive/v1.02.tar.gz
  tar -xvf v1.02.tar.gz
  cd RaGOO-1.02/
  python3 setup.py install
  chmod +x ragoo.py

  ## Cleanup
  rm -rf /opt/v1.02.tar.gz /opt/minimap2-2.15_x64-linux.tar.bz2
  apt-get remove wget python3-pip -y
  apt-get autoremove -y
  apt-get -y clean all

%runscript
  exec python3 /opt/RaGOO-1.02/ragoo.py "$@"

Collection


View on Datalad

Metrics

key value
id /containers/powerPlant-ragoo-srf-latest
collection name powerPlant/ragoo-srf
branch master
tag latest
commit 0b8f2b4f6cbe5ada832ae6fe8bbca04c3a03e83e
version (container hash) 47fcba155d1a65487f8849f5b7c08d4a
build date 2019-02-21T20:57:18.326Z
size (MB) 216
size (bytes) 79208479
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.