powerPlant/ragoo-srf:latest
$ singularity pull shub://powerPlant/ragoo-srf:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:bionic
%labels
Maintainer tejas.sevak@plantandfood.co.nz
Version 1.02
%environment
PATH=/opt/minimap2-2.15_x64-linux:$PATH
export PATH
%post
## Download build prerequisites
apt-get -y update
apt-get -y install python3 wget python3-pip python3-setuptools
cd /opt
wget https://github.com/lh3/minimap2/releases/download/v2.15/minimap2-2.15_x64-linux.tar.bz2
tar -xvf minimap2-2.15_x64-linux.tar.bz2
wget https://github.com/malonge/RaGOO/archive/v1.02.tar.gz
tar -xvf v1.02.tar.gz
cd RaGOO-1.02/
python3 setup.py install
chmod +x ragoo.py
## Cleanup
rm -rf /opt/v1.02.tar.gz /opt/minimap2-2.15_x64-linux.tar.bz2
apt-get remove wget python3-pip -y
apt-get autoremove -y
apt-get -y clean all
%runscript
exec python3 /opt/RaGOO-1.02/ragoo.py "$@"
Collection
- Name: powerPlant/ragoo-srf
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/powerPlant-ragoo-srf-latest |
collection name | powerPlant/ragoo-srf |
branch | master |
tag | latest |
commit | 0b8f2b4f6cbe5ada832ae6fe8bbca04c3a03e83e |
version (container hash) | 47fcba155d1a65487f8849f5b7c08d4a |
build date | 2019-02-21T20:57:18.326Z |
size (MB) | 216 |
size (bytes) | 79208479 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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