powerPlant/portcullis-srf:latest
$ singularity pull shub://powerPlant/portcullis-srf:latest
Singularity Recipe
Bootstrap: docker
From: fedora:27
%labels
Maintainer tejas.sevak@plantandfood.co.nz
Version 1.1.2
%post
## Install required packages
dnf install -y autoconf automake bzip2 bzip2-devel gcc gcc-c++ git libgomp libtool libstdc++-static make perl python35 python3-devel wget which xz xz-devel zlib zlib-devel
pip3.6 install pandas
pip3.6 install sphinx
## samtools compilation
wget -q https://github.com/samtools/samtools/releases/download/1.6/samtools-1.6.tar.bz2
tar -xvf samtools-1.6.tar.bz2
cd samtools-1.6
./configure --without-curses
make -j2
make install
cd ..
## portcullis compilation
wget -q https://github.com/maplesond/portcullis/archive/Release-1.1.2.tar.gz
tar -xvf Release-1.1.2.tar.gz
cd portcullis-Release-1.1.2
./autogen.sh
./build_boost.sh
./configure
make
make install
echo "/portcullis/deps/boost/build/lib/" > /etc/ld.so.conf.d/portcullis.conf
ldconfig
## clean up
dnf -y remove autoconf automake bzip2-devel gcc gcc-c++ git make python3-devel wget which xz-devel zlib-devel
dnf -y clean all
rm -rf /samtools* /portcullis* /Release-*
%runscript
portcullis "$@"
Collection
- Name: powerPlant/portcullis-srf
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/powerPlant-portcullis-srf-latest |
collection name | powerPlant/portcullis-srf |
branch | master |
tag | latest |
commit | 702718d1beebc165e42f5b256c7976d76de962dc |
version (container hash) | c2719658bbf639c3b596136a5c0591b0 |
build date | 2019-09-26T16:48:48.047Z |
size (MB) | 669 |
size (bytes) | 218681375 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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