powerPlant/crema-srf:latest

$ singularity pull shub://powerPlant/crema-srf:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu:bionic

%labels
Maintainer eric.burgueno@plantandfood.co.nz
Version fe4cf7a

%post
  ## Download build prerequisites
  apt-get -y update
  apt-get -y install git python python-pip python3 python3-pip r-base
  pip install CPAT
  pip3 install biopython scikit-learn pandas

  cd /opt
  git clone https://github.com/gbgolding/crema.git
  cd crema
  git checkout fe4cf7a
  chmod +x bin/predict.py

  ## Cleanup
  apt-get -y remove git python-pip python3-pip
  apt-get -y autoremove
  apt-get -y clean all

%runscript
  exec python3 /opt/crema/bin/predict.py "$@"

Collection


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Metrics

key value
id /containers/powerPlant-crema-srf-latest
collection name powerPlant/crema-srf
branch master
tag latest
commit 45e6e823d6e66138a96b5acd1524dece2ae7eb5a
version (container hash) 8a031fa01334bb076f4fe687219bc55f
build date 2019-02-15T05:11:19.197Z
size (MB) 1312
size (bytes) 520540191
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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