powerPlant/crema-srf:fe4cf7a

$ singularity pull shub://powerPlant/crema-srf:fe4cf7a

Singularity Recipe

Bootstrap: docker
From: ubuntu:bionic

%labels
Maintainer eric.burgueno@plantandfood.co.nz
Version fe4cf7a

%post
  ## Download build prerequisites
  apt-get -y update
  apt-get -y install git python python-pip python3 python3-pip r-base
  pip install CPAT
  pip3 install biopython scikit-learn pandas

  cd /opt
  git clone https://github.com/gbgolding/crema.git
  cd crema
  git checkout fe4cf7a
  chmod +x bin/predict.py

  ## Cleanup
  apt-get -y remove git python-pip python3-pip
  apt-get -y autoremove
  apt-get -y clean all

%runscript
  exec python3 /opt/crema/bin/predict.py "$@"

Collection

• Name: powerPlant/crema-srf
• License: None

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