powerPlant/bismark-srf:latest

$ singularity pull shub://powerPlant/bismark-srf:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu:bionic

%labels
Maintainer eric.burgueno@plantandfood.co.nz
Version 0.20.0

%environment
 PATH=/Bismark-0.20.0:$PATH
 export PATH

%post
  ## Download prerequisites
  apt-get update
  apt-get -y install bowtie2 curl libfile-copy-recursive-perl samtools

  curl -OL https://github.com/FelixKrueger/Bismark/archive/0.20.0.tar.gz

  tar -xvf 0.20.0.tar.gz
  
  ## Cleanup
  apt-get -y remove --purge curl
  apt-get -y clean all
  apt-get -y autoremove --purge
  rm -rf /0.20.0.tar.gz

%runscript
bismark "$@"

Collection

• Name: powerPlant/bismark-srf
• License: None

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