powerPlant/angsd-srf:0.919

$ singularity pull shub://powerPlant/angsd-srf:0.919

Singularity Recipe

Bootstrap: docker
From: ubuntu:bionic

%labels
Maintainer eric.burgueno@plantandfood.co.nz
Version 0.919

%post
  ## Download build prerequisites
  apt-get update
  apt-get -y install g++ gcc libbz2-dev libcurl4 libcurl4-openssl-dev libhts2 libhts-dev libssl-dev libzip4 libzip-dev make wget

  cd /opt
  wget https://github.com/ANGSD/angsd/archive/0.919.tar.gz
  tar -xzf 0.919.tar.gz
  cd angsd-0.919
  make
  install -dm0755 /usr/local/bin
  install -Dm0755 angsd /usr/local/bin
  cd misc
  install -Dm0755 thetaStat realSFS /usr/local/bin

  ## Cleanup
  apt-get -y autoremove g++ gcc libcurl4-openssl-dev libhts-dev libssl-dev libzip-dev make wget
  apt-get -y clean all
  rm -rf /opt/*

%runscript
  exec angsd "$@"

Collection


View on Datalad

Metrics

key value
id /containers/powerPlant-angsd-srf-0.919
collection name powerPlant/angsd-srf
branch master
tag 0.919
commit cc40b6c8a3d8021ed5df2aa40f18c5a0e9993ceb
version (container hash) 317432c891dc0b470e2a8817fe7275d4
build date 2019-02-07T08:10:41.387Z
size (MB) 142
size (bytes) 59432991
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.