powerPlant/3d-dna-srf:180922
$ singularity pull shub://powerPlant/3d-dna-srf:180922
Singularity Recipe
Bootstrap: docker
From: ubuntu:cosmic
%labels
Maintainer eric.burgueno@plantandfood.co.nz
Version 180922
%environment
PATH=/opt/3d-dna:$PATH
export PATH
%post
## Download build prerequisites
apt-get update
apt-get -y install git make openjdk-8-jre parallel python-matplotlib python-numpy python-scipy wget
## Install LastZ (version 1.03.73 released 20150708)
wget http://www.bx.psu.edu/~rsharris/lastz/newer/lastz-1.03.73.tar.gz
tar -xzf lastz-1.03.73.tar.gz
cd lastz-distrib-1.03.73/src
sed -i 's/-Werror //' Makefile
make
LASTZ_INSTALL=/usr/bin/ make install
## Install 3d-dna
cd /opt
git clone https://github.com/theaidenlab/3d-dna.git
cd 3d-dna
git checkout 3f18163
chmod +x run-asm-pipeline.sh run-asm-pipeline-post-review.sh
## Cleanup
apt-get -y remove git make wget
apt-get -y clean all
rm -rf /lastz*
%runscript
exec run-asm-pipeline.sh "$@"
Collection
- Name: powerPlant/3d-dna-srf
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/powerPlant-3d-dna-srf-180922 |
collection name | powerPlant/3d-dna-srf |
branch | master |
tag | 180922 |
commit | cb2defdf92544d481d003612c801276a1612ac85 |
version (container hash) | 80a85d39d73a9da3c07fb4316c273fb7 |
build date | 2019-02-05T05:54:32.623Z |
size (MB) | 1004 |
size (bytes) | 410226719 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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