powerPlant/3d-dna-srf:180922

$ singularity pull shub://powerPlant/3d-dna-srf:180922

Singularity Recipe

Bootstrap: docker
From: ubuntu:cosmic

%labels
Maintainer eric.burgueno@plantandfood.co.nz
Version 180922

%environment
  PATH=/opt/3d-dna:$PATH
  export PATH

%post
  ## Download build prerequisites
  apt-get update
  apt-get -y install git make openjdk-8-jre parallel python-matplotlib python-numpy python-scipy wget
  
  ## Install LastZ (version 1.03.73 released 20150708)
  wget http://www.bx.psu.edu/~rsharris/lastz/newer/lastz-1.03.73.tar.gz
  tar -xzf lastz-1.03.73.tar.gz
  cd lastz-distrib-1.03.73/src
  sed -i 's/-Werror //' Makefile
  make
  LASTZ_INSTALL=/usr/bin/ make install

  ## Install 3d-dna
  cd /opt
  git clone https://github.com/theaidenlab/3d-dna.git
  cd 3d-dna
  git checkout 3f18163
  chmod +x run-asm-pipeline.sh run-asm-pipeline-post-review.sh

  ## Cleanup
  apt-get -y remove git make wget
  apt-get -y clean all
  rm -rf /lastz*

%runscript
  exec run-asm-pipeline.sh "$@"

Collection


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Metrics

key value
id /containers/powerPlant-3d-dna-srf-180922
collection name powerPlant/3d-dna-srf
branch master
tag 180922
commit cb2defdf92544d481d003612c801276a1612ac85
version (container hash) 80a85d39d73a9da3c07fb4316c273fb7
build date 2019-02-05T05:54:32.623Z
size (MB) 1004
size (bytes) 410226719
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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