poojabhat1690/rRequirements:latest
$ singularity pull shub://poojabhat1690/rRequirements:latest
Singularity Recipe
BootStrap: docker
From:ubuntu:16.04
%post
apt-get -y update
apt-get install -y tzdata && \
apt-get install -y software-properties-common && \
add-apt-repository -y -u ppa:certbot/certbot && \
apt-get install -y libopenblas-dev libcurl4-openssl-dev libopenmpi-dev openmpi-bin openmpi-common openmpi-doc openssh-client openssh-server libssh-dev wget vim git nano git cmake gfortran g++ curl wget python autoconf bzip2 libtool libtool-bin r-base-core libxml2-dev
R --slave -e 'source("https://bioconductor.org/biocLite.R")'
R --slave -e 'BiocInstaller::biocLite(c("GenomicRanges"))'
R --slave -e 'BiocInstaller::biocLite(c("biomaRt"))'
R --slave -e 'BiocInstaller::biocLite(c("Biostrings"))'
R --slave -e 'install.packages(c("checkmate", "ggplot2","reshape","dplyr","plyr","tibble"), repos="https://cloud.r-project.org/")'
%environment
export LC_ALL=C
export PATH=$PATH
Collection
- Name: poojabhat1690/rRequirements
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/poojabhat1690-rRequirements-latest |
collection name | poojabhat1690/rRequirements |
branch | master |
tag | latest |
commit | 99fa51de2984f162506d6e5405ea938e57244467 |
version (container hash) | 65dbce3b41e637d2f67fa6b730a76bd1 |
build date | 2019-10-09T07:41:25.311Z |
size (MB) | 1284.0 |
size (bytes) | 454885407 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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