pndni/minc-ants-fsl-and-fs-container:1.0.0

$ singularity pull shub://pndni/minc-ants-fsl-and-fs-container:1.0.0

Singularity Recipe

Bootstrap: shub
From: pndni/minc-ants-and-fsl-container:1.0.0
# OSVersion: 7
# MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/x86_64/
# Include: yum
#
%post

    ##############
    # freesurfer #
    ##############
    wget --no-verbose --output-document=/root/freesurfer.tar.gz https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.1/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1.tar.gz
    tar -C /opt -xzvf /root/freesurfer.tar.gz
    rm /root/freesurfer.tar.gz

%appenv freesurfer
    if [ -n "$FSLDIR" ]
    then
	>&2 echo "freesurfer must be loaded before fsl"
	exit 1
    fi
    export NO_FSFAST=1
    export FREESURFER_HOME=/opt/freesurfer
    source $FREESURFER_HOME/SetUpFreeSurfer.sh

%applabels freesurfer
    License https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferSoftwareLicense
    URL https://surfer.nmr.mgh.harvard.edu/
    Version 6.0.1

%apphelp freesurfer
    Using freesurfer requires a freesurfer license file.
    A license file may be obtained from
    https://surfer.nmr.mgh.harvard.edu/registration.html
    Ensure that the license file is visible from the container,
    and set the environment variable FS_LICENSE to point to it
    (or copy the file to /opt/freesurfer/license.txt from
    inside the container)

%appenv freesurfer_nominc
    export NO_MINC=1
    source $SCIF_APPENV_freesurfer

%labels
    Maintainer Steven Tilley
    Version 1.0.0

Collection


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key value
id /containers/pndni-minc-ants-fsl-and-fs-container-1.0.0
collection name pndni/minc-ants-fsl-and-fs-container
branch 1.0.0
tag 1.0.0
commit 0e510341f242e9045b58ca2d18cdbfbdf11abc4f
version (container hash) be0f1e4d3d3ad67a771bf8d20fb7f025
build date 2019-04-12T04:45:46.870Z
size (MB) 26057
size (bytes) 10608070687
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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