pndni/freesurfer-6.0.1-container:1.1.0

$ singularity pull shub://pndni/freesurfer-6.0.1-container:1.1.0

Singularity Recipe

Bootstrap: shub
From: pndni/centos7-base:1.4.0
#OSVersion: 7
#MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/x86_64/
#Include: yum

%post

    ##############
    # freesurfer #
    ##############
    wget --no-verbose --output-document=/root/freesurfer.tar.gz https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.1/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1.tar.gz
    tar -C /opt -xzvf /root/freesurfer.tar.gz
    rm /root/freesurfer.tar.gz
    mkdir /mnt/input
    mkdir /mnt/output
    mkdir /mnt/work_dir

%environment
    export NO_FSFAST=1
    export FREESURFER_HOME=/opt/freesurfer
    source $FREESURFER_HOME/SetUpFreeSurfer.sh

%help
    Using freesurfer requires a freesurfer license file.
    A license file may be obtained from
    https://surfer.nmr.mgh.harvard.edu/registration.html
    Ensure that the license file is visible from the container,
    and set the environment variable FS_LICENSE to point to it
    (or copy the file to /opt/freesurfer/license.txt from
    inside the container)

%labels
    Maintainer Steven Tilley
    Version 1.1.0
    FreeSurfer_License https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferSoftwareLicense
    FreeSurfer_URL https://surfer.nmr.mgh.harvard.edu/
    FreeSurfer_Version 6.0.1

Collection


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Metrics

key value
id /containers/pndni-freesurfer-6.0.1-container-1.1.0
collection name pndni/freesurfer-6.0.1-container
branch master
tag 1.1.0
commit 028bbd281382d92a10dc7d828456ba0322c04b0a
version (container hash) 8d821b840450292b3419cf002c2095b0
build date 2019-05-01T22:22:28.491Z
size (MB) 11135
size (bytes) 4768043039
SIF Download URL (please use pull with shub://)
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