pndni/freesurfer-5.3.0-container:1.0.0

$ singularity pull shub://pndni/freesurfer-5.3.0-container:1.0.0

Singularity Recipe

Bootstrap: shub
From: pndni/centos7-base:1.4.0
#OSVersion: 7
#MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/x86_64/
#Include: yum

%post

    ##############
    # freesurfer #
    ##############
    wget --no-verbose --output-document=/root/freesurfer.tar.gz https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0/freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz
    tar -C /opt -xzvf /root/freesurfer.tar.gz
    rm /root/freesurfer.tar.gz
    mkdir /mnt/input
    mkdir /mnt/output
    mkdir /mnt/work_dir

%environment
    export NO_FSFAST=1
    export FREESURFER_HOME=/opt/freesurfer
    source $FREESURFER_HOME/SetUpFreeSurfer.sh

%help
    Using freesurfer requires a freesurfer license file.
    A license file may be obtained from
    https://surfer.nmr.mgh.harvard.edu/registration.html
    Ensure that the license file is visible from the container,
    and set the environment variable FS_LICENSE to point to it
    (or copy the file to /opt/freesurfer/license.txt from
    inside the container)

%labels
    Maintainer Steven Tilley
    Version 1.0.0
    FreeSurfer_License https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferSoftwareLicense
    FreeSurfer_URL https://surfer.nmr.mgh.harvard.edu/
    FreeSurfer_Version 5.3.0

Collection


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Metrics

key value
id /containers/pndni-freesurfer-5.3.0-container-1.0.0
collection name pndni/freesurfer-5.3.0-container
branch master
tag 1.0.0
commit 07dd5bb737bf7f0ff6c96ac6a3cefa442fd4ce92
version (container hash) 4cf0d7abb99fb44fb6254f437b0d4de4
build date 2019-05-17T20:05:29.600Z
size (MB) 9020
size (bytes) 4347408415
SIF Download URL (please use pull with shub://)
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