pndni/dcm-conversion-container:1.0.0

$ singularity pull shub://pndni/dcm-conversion-container:1.0.0

Singularity Recipe

Bootstrap: shub
From: pndni/centos7-base:1.2.0

%post
    yum install -y epel-release
    yum install -y python36 python36-pip python36-devel libstdc++-static pigz
    pip3.6 install heudiconv
    git clone --branch v1.0.20181125 https://github.com/rordenlab/dcm2niix.git
    cd dcm2niix
    mkdir build && cd build
    /opt/cmake/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/dcm2niix ..
    make
    make install

%environment
    export PATH=/opt/dcm2niix/bin:$PATH

%apprun heudiconv
    heudiconv "$@"

%apprun dcm2niix
    dcm2niix "$@"

%labels
    Maintainer Steven Tilley
    Version 1.0.0

Collection


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Metrics

key value
id /containers/pndni-dcm-conversion-container-1.0.0
collection name pndni/dcm-conversion-container
branch 1.0.0
tag 1.0.0
commit 1c98d8aa953aa55cd7cb0e13832315d7a74a2d4c
version (container hash) 6c951d892c6cb6b1994f6152b39e46a7
build date 2019-04-04T14:43:43.325Z
size (MB) 1477
size (bytes) 509276191
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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