phgenomics-singularity/iqtree:latest

$ singularity pull shub://phgenomics-singularity/iqtree:latest

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3:4.5.12

%help
A Singularity image for Snippy

%labels
Maintainer Kristy Horan
Build 1.0
iqtree_version 1.6.12

%environment
export VERSION=1.6.12
export PATH=/opt/conda/bin:$PATH

%post

apt-get update
apt-get -y install locales sudo

export PATH=/opt/conda/bin:$PATH

conda config --add channels conda-forge
conda config --add channels defaults
conda config --add channels r
conda config --add channels bioconda

conda install -c conda-forge -c bioconda iqtree=1.6.12

export LANGUAGE=en_US.UTF-8
export LANG=en_US.UTF-8
export LC_ALL=en_US.UTF-8

Collection

• Name: phgenomics-singularity/iqtree
• License: None

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