phgenomics-singularity/assemblers:latest

$ singularity pull shub://phgenomics-singularity/assemblers:latest

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3:4.5.12

%help
A Singularity image for assemblers

%labels
Maintainer Kristy Horan
Build 1.0
assemblers

%environment
export VERSION=1.0

%post
 # set versions of software to install
  export VERSION=1.0
  export SPADES_VERSION=3.13.0
  export SHOVILL_VERSION=1.0.9
  export SKESA_VERSION=2.3.0
  
  export PATH=/opt/conda/bin:PATH
  conda upgrade -c defaults --override-channels conda
  conda config --add channels conda-forge
  conda config --add channels defaults
  conda config --add channels r
  conda config --add channels bioconda
 
  conda install -c bioconda spades=${SPADES_VERSION}
  conda install -c bioconda shovill=${SHOVILL_VERSION}
  conda install -c bioconda skesa=${SKESA_VERSION}

  pip install toml
  pip install biopython
  
  echo "Done"

Collection


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Metrics

key value
id /containers/phgenomics-singularity-assemblers-latest
collection name phgenomics-singularity/assemblers
branch master
tag latest
commit 83cfadb88e516299055552811c2d33b91b04d081
version (container hash) 7b787f1da0db706e77ed27d14d3ce183
build date 2020-02-18T00:00:14.368Z
size (MB) 1997.0
size (bytes) 738373663
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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