phgenomics-singularity/assemblers:latest
$ singularity pull shub://phgenomics-singularity/assemblers:latest
Singularity Recipe
Bootstrap: docker
From: continuumio/miniconda3:4.5.12
%help
A Singularity image for assemblers
%labels
Maintainer Kristy Horan
Build 1.0
assemblers
%environment
export VERSION=1.0
%post
# set versions of software to install
export VERSION=1.0
export SPADES_VERSION=3.13.0
export SHOVILL_VERSION=1.0.9
export SKESA_VERSION=2.3.0
export PATH=/opt/conda/bin:PATH
conda upgrade -c defaults --override-channels conda
conda config --add channels conda-forge
conda config --add channels defaults
conda config --add channels r
conda config --add channels bioconda
conda install -c bioconda spades=${SPADES_VERSION}
conda install -c bioconda shovill=${SHOVILL_VERSION}
conda install -c bioconda skesa=${SKESA_VERSION}
pip install toml
pip install biopython
echo "Done"
Collection
- Name: phgenomics-singularity/assemblers
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/phgenomics-singularity-assemblers-latest |
collection name | phgenomics-singularity/assemblers |
branch | master |
tag | latest |
commit | 83cfadb88e516299055552811c2d33b91b04d081 |
version (container hash) | 7b787f1da0db706e77ed27d14d3ce183 |
build date | 2020-02-18T00:00:14.368Z |
size (MB) | 1997.0 |
size (bytes) | 738373663 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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