peterk87/nf-iav-illumina:latest

$ singularity pull shub://peterk87/nf-iav-illumina:latest

Singularity Recipe

Bootstrap:docker
From:debian:latest

%labels
    MAINTAINER Peter Kruczkiewicz
    DESCRIPTION Singularity image containing all requirements for the peterk87/nf-iav-illumina pipeline
    VERSION 1.1.0

%environment
    export PATH=/opt/conda/envs/nf-iav-illumina-1.1.0/bin:/opt/conda/bin:$PATH
    export LANG=C.UTF-8
    export LC_ALL=C.UTF-8

%files
    environment.yml /

%post
    apt-get update --fix-missing
    apt-get install -y wget bzip2 ca-certificates curl git procps
    apt-get clean
    rm -rf /var/lib/apt/lists/*
    wget https://repo.anaconda.com/miniconda/Miniconda3-4.7.10-Linux-x86_64.sh -O /miniconda.sh 
    /bin/bash /miniconda.sh -b -p /opt/conda
    rm /miniconda.sh
    ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh
    export PATH=/opt/conda/bin:$PATH
    conda install conda=4.7.12
    conda env create -f /environment.yml
    conda clean -tipsy

Collection


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Metrics

key value
id /containers/peterk87-nf-iav-illumina-latest
collection name peterk87/nf-iav-illumina
branch master
tag latest
commit 39610c05d83b9dcdcd43c0d999b1923caf29c3a6
version (container hash) cb8f2e45d5cb4336df775e73a8fba659
build date 2021-04-19T13:29:39.934Z
size (MB) 1109.0
size (bytes) 398360607
SIF Download URL (please use pull with shub://)
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