peterk87/nf-iav-illumina:latest
$ singularity pull shub://peterk87/nf-iav-illumina:latest
Singularity Recipe
Bootstrap:docker
From:debian:latest
%labels
MAINTAINER Peter Kruczkiewicz
DESCRIPTION Singularity image containing all requirements for the peterk87/nf-iav-illumina pipeline
VERSION 1.1.0
%environment
export PATH=/opt/conda/envs/nf-iav-illumina-1.1.0/bin:/opt/conda/bin:$PATH
export LANG=C.UTF-8
export LC_ALL=C.UTF-8
%files
environment.yml /
%post
apt-get update --fix-missing
apt-get install -y wget bzip2 ca-certificates curl git procps
apt-get clean
rm -rf /var/lib/apt/lists/*
wget https://repo.anaconda.com/miniconda/Miniconda3-4.7.10-Linux-x86_64.sh -O /miniconda.sh
/bin/bash /miniconda.sh -b -p /opt/conda
rm /miniconda.sh
ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh
export PATH=/opt/conda/bin:$PATH
conda install conda=4.7.12
conda env create -f /environment.yml
conda clean -tipsy
Collection
- Name: peterk87/nf-iav-illumina
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/peterk87-nf-iav-illumina-latest |
collection name | peterk87/nf-iav-illumina |
branch | master |
tag | latest |
commit | 39610c05d83b9dcdcd43c0d999b1923caf29c3a6 |
version (container hash) | cb8f2e45d5cb4336df775e73a8fba659 |
build date | 2021-04-19T13:29:39.934Z |
size (MB) | 1109.0 |
size (bytes) | 398360607 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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