pescobar/singularity-openmalaria:latest
$ singularity pull shub://pescobar/singularity-openmalaria:latest
Singularity Recipe
Bootstrap: docker
From: centos:7
%post
export OPENMALARIA_VERSION="38.0"
# install the OpenMalara dependencies
yum -y install epel-release
yum -y install \
boost-devel \
cmake \
gcc-c++ \
glibc-devel \
gsl-devel \
make \
wget \
xerces-c-devel \
xsd \
zlib-devel
yum clean all
# download the source code and compile it
cd /usr/local/src/
wget https://github.com/SwissTPH/openmalaria/archive/schema-${OPENMALARIA_VERSION}.tar.gz
tar xf schema-${OPENMALARIA_VERSION}.tar.gz
mkdir -p /usr/local/src/openmalaria-schema-${OPENMALARIA_VERSION}/build/
cd /usr/local/src/openmalaria-schema-${OPENMALARIA_VERSION}/build/
cmake ..
make
cp openMalaria /usr/local/bin
%runscript
exec openMalaria "$@"
%apprun openmalaria
openMalaria "@"
Collection
- Name: pescobar/singularity-openmalaria
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/pescobar-singularity-openmalaria-latest |
collection name | pescobar/singularity-openmalaria |
branch | master |
tag | latest |
commit | 633db93a56f4ffd5373b14b061b3a4dce58485e6 |
version (container hash) | 6149a5b9ff7f5350e534157d1f3f01df |
build date | 2018-09-13T11:38:52.487Z |
size (MB) | 672 |
size (bytes) | 186212383 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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