pchengi/cmorfixer_env:latest

$ singularity pull shub://pchengi/cmorfixer_env:latest

Singularity Recipe

Bootstrap: docker
From: debian

%files
    scripts/ /opt/
    cmor_fixer/ /opt/

%post
    apt-get update && apt-get install -y git wget make libssl-dev libpython3-dev build-essential vim screen bash
    cd /opt/cmor_fixer
    export SHELL=/bin/bash
    git clone https://github.com/pchengi/cmor-fixer.git
    wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
    bash Miniconda3-latest-Linux-x86_64.sh -b -u -p /opt/cmor_fixer/miniconda3
    echo 'miniconda3path=/opt/cmor_fixer/miniconda3/' >>/etc/bashrc
    echo "alias activateminiconda3='source /opt/cmor_fixer/miniconda3/etc/profile.d/conda.sh'" >>/etc/bashrc
    /bin/bash -c 'source /etc/bashrc'
    /bin/bash -c 'source /opt/cmor_fixer/miniconda3/etc/profile.d/conda.sh'
    /bin/bash -c '/opt/cmor_fixer/miniconda3/bin/conda update -y -n base -c defaults conda'
    cd cmor-fixer && git checkout check-output-filename
    /bin/bash -c '/opt/cmor_fixer/miniconda3/bin/conda env create -f environment.yml'

Collection


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Metrics

key value
id /containers/pchengi-cmorfixer_env-latest
collection name pchengi/cmorfixer_env
branch master
tag latest
commit 65a35041f4f8f8f31da50fb3f667b41b3fee25a9
version (container hash) ae4eab894817a871bae324bfd2898512
build date 2021-01-21T18:18:31.626Z
size (MB) 1991.0
size (bytes) 845430815
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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