ovcharennih/Singularity:latest
$ singularity pull shub://ovcharennih/Singularity:latest
Singularity Recipe
BootStrap: docker
From: nvidia/cuda:8.0-cudnn6-runtime-ubuntu16.04
################################################################################
%labels
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MAINTAINER Wolfgang Resch
VERSION v3
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%environment
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export PATH=/usr/local/sbin:/usr/sbin:/sbin:/bin:/usr/bin:/usr/local/bin:/usr/local/cuda/bin:
export PYTHONPATH=/usr/share/pdb2pqr:
################################################################################
%post
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###
### install keras + tensorflow + other useful packages
###
apt-get update
apt-get install -y wget libhdf5-dev graphviz locales python python-pip git xvfb python-vtk pdb2pqr python-pandas
locale-gen en_US.UTF-8
apt-get clean
pip install --upgrade pip
pip install tensorflow-gpu==1.4.0
pip install keras==2.0.8
pip install setuptools wheel Pillow scikit-learn matplotlib ipython==5.5.0
pip install h5py
pip install mayavi
pip install --upgrade notebook
pip install cython
pip install Biopython
wget http://freesasa.github.io/freesasa-2.0.2.tar.gz
tar -xzf freesasa-2.0.2.tar.gz
cd freesasa-2.0.2
./configure CFLAGS=-fPIC --enable-python-bindings --disable-json --disable-xml
make && make install
###
### destination for NIH HPC bind mounts
###
mkdir /gpfs /spin1 /gs2 /gs3 /gs4 /gs5 /gs6 /gs7 /gs8 /data /scratch /fdb /lscratch /pdb
Collection
- Name: ovcharennih/Singularity
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/ovcharennih-Singularity-latest |
collection name | ovcharennih/Singularity |
branch | master |
tag | latest |
commit | b8d51ccbd7891900ac76f7549f992284e071a0f4 |
version (container hash) | 61882e3ed7da5ab1021cc847bd33409e |
build date | 2017-11-20T17:42:29.415Z |
size (MB) | 3057 |
size (bytes) | 1491247135 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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