ous-uio-bioinfo-core/mirdeep_workflow:preprocess
$ singularity pull shub://ous-uio-bioinfo-core/mirdeep_workflow:preprocess
Singularity Recipe
Bootstrap: docker
From: ubuntu:bionic-20191029
%environment
CONDA="/usr/local/miniconda2/bin"
PATH="${CONDA}:${PATH}"
export PATH
%post
apt-get update && apt-get install -y wget
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
bash Miniconda2-latest-Linux-x86_64.sh -b -p /usr/local/miniconda2
CONDA="/usr/local/miniconda2/bin"
export PATH=${CONDA}:${PATH}
conda config --add channels bioconda
conda install -y \
fastqc \
bowtie=1.0.0 \
fastx_toolkit \
cutadapt=1.8
echo "PATH=${PATH}"
mkdir /cluster /work /tsd /projects
%runscript
exec /bin/bash "$@"
Collection
- Name: ous-uio-bioinfo-core/mirdeep_workflow
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/ous-uio-bioinfo-core-mirdeep_workflow-preprocess |
collection name | ous-uio-bioinfo-core/mirdeep_workflow |
branch | master |
tag | preprocess |
commit | 032bfda19706d8b7d637e89fd31c8a11154cd925 |
version (container hash) | 0a298f9d357db560a3cb3fb2c3636aa7d36ea4e69b06e9fa8ccb308b9f186da2 |
build date | 2020-09-18T07:45:58.433Z |
size (MB) | 500.98046875 |
size (bytes) | 525316096 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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