ous-uio-bioinfo-core/mirdeep_workflow:mirdeep2
$ singularity pull shub://ous-uio-bioinfo-core/mirdeep_workflow:mirdeep2
Singularity Recipe
BootStrap: docker
From: forrestzhang/docker-mirdeep2:latest
%environment
PATH="/opt/software/mirdeep2:${PATH}"
export PATH
%runscript
echo "forrestzhang/docker-mirdeep2"
echo "PATH=${PATH}"
exec /bin/bash "$@"
%post
sed s'/^test_input_files();/#test_input_files();/' /opt/software/mirdeep2/miRDeep2.pl > /opt/software/mirdeep2/miRDeep2.no_input_tests.pl
chmod ugo+rwx /opt/software/mirdeep2/mapper.pl
chmod ugo+rwx /opt/software/mirdeep2/miRDeep2.no_input_tests.pl
mkdir /cluster /work /usit /projects
Collection
- Name: ous-uio-bioinfo-core/mirdeep_workflow
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/ous-uio-bioinfo-core-mirdeep_workflow-mirdeep2 |
collection name | ous-uio-bioinfo-core/mirdeep_workflow |
branch | master |
tag | mirdeep2 |
commit | 746bc193a37794de619d35aa6fdbd9deb308cb2f |
version (container hash) | 9af661eacb0362e659803296d69c7117f6995e55c49fcf62befd5c0ff9f4cbe8 |
build date | 2020-11-04T14:21:52.183Z |
size (MB) | 326.16015625 |
size (bytes) | 342003712 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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