ous-uio-bioinfo-core/mirdeep_workflow:mirdeep2

$ singularity pull shub://ous-uio-bioinfo-core/mirdeep_workflow:mirdeep2

Singularity Recipe

BootStrap: docker
From: forrestzhang/docker-mirdeep2:latest 

%environment
    PATH="/opt/software/mirdeep2:${PATH}"
    export PATH

%runscript
    echo "forrestzhang/docker-mirdeep2"
    echo "PATH=${PATH}"
    exec /bin/bash "$@"

%post
    sed s'/^test_input_files();/#test_input_files();/' /opt/software/mirdeep2/miRDeep2.pl > /opt/software/mirdeep2/miRDeep2.no_input_tests.pl
    chmod ugo+rwx /opt/software/mirdeep2/mapper.pl
    chmod ugo+rwx /opt/software/mirdeep2/miRDeep2.no_input_tests.pl
    mkdir /cluster /work /usit /projects

Collection


View on Datalad

Metrics

key value
id /containers/ous-uio-bioinfo-core-mirdeep_workflow-mirdeep2
collection name ous-uio-bioinfo-core/mirdeep_workflow
branch master
tag mirdeep2
commit 746bc193a37794de619d35aa6fdbd9deb308cb2f
version (container hash) 9af661eacb0362e659803296d69c7117f6995e55c49fcf62befd5c0ff9f4cbe8
build date 2020-11-04T14:21:52.183Z
size (MB) 326.16015625
size (bytes) 342003712
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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