ous-uio-bioinfo-core/containerised_ATACseq_pipeline:trimmomatic

$ singularity pull shub://ous-uio-bioinfo-core/containerised_ATACseq_pipeline:trimmomatic

Singularity Recipe

Bootstrap: docker
From: ubuntu:bionic-20191029

%environment
	CONDA="/usr/local/miniconda3/bin"
	export PATH="${CONDA}:${PATH}"

%post
	apt-get update && apt-get install -y wget
	wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
	bash Miniconda3-latest-Linux-x86_64.sh -b -f -u -p /usr/local/miniconda3
	rm Miniconda3-latest-Linux-x86_64.sh

	CONDA="/usr/local/miniconda3/bin"
	export PATH=${CONDA}:${PATH}

	conda config --add channels bioconda

	conda install -y \
		trimmomatic=0.39

	echo "PATH=${PATH}"

	mkdir /cluster /work /tsd /projects

%runscript
	echo "Running ubuntu bionic container with trimmomatic v0.39"
	exec /bin/bash "$@"

Collection


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Metrics

key value
id /containers/ous-uio-bioinfo-core-containerised_ATACseq_pipeline-trimmomatic
collection name ous-uio-bioinfo-core/containerised_ATACseq_pipeline
branch master
tag trimmomatic
commit 036887883480fb8dbf372f2ce2eba35b6610a12c
version (container hash) 3d31fcee783dd9531a6152c7ef9bdd4257f4886313c578e913ddc2d03247ac90
build date 2020-09-24T16:54:13.816Z
size (MB) 409.66796875
size (bytes) 429568000
SIF Download URL (please use pull with shub://)
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Singularity Recipe Singularity Recipe on Datalad
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