ous-uio-bioinfo-core/containerised_ATACseq_pipeline:trimmomatic
$ singularity pull shub://ous-uio-bioinfo-core/containerised_ATACseq_pipeline:trimmomatic
Singularity Recipe
Bootstrap: docker
From: ubuntu:bionic-20191029
%environment
CONDA="/usr/local/miniconda3/bin"
export PATH="${CONDA}:${PATH}"
%post
apt-get update && apt-get install -y wget
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -f -u -p /usr/local/miniconda3
rm Miniconda3-latest-Linux-x86_64.sh
CONDA="/usr/local/miniconda3/bin"
export PATH=${CONDA}:${PATH}
conda config --add channels bioconda
conda install -y \
trimmomatic=0.39
echo "PATH=${PATH}"
mkdir /cluster /work /tsd /projects
%runscript
echo "Running ubuntu bionic container with trimmomatic v0.39"
exec /bin/bash "$@"
Collection
- Name: ous-uio-bioinfo-core/containerised_ATACseq_pipeline
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/ous-uio-bioinfo-core-containerised_ATACseq_pipeline-trimmomatic |
collection name | ous-uio-bioinfo-core/containerised_ATACseq_pipeline |
branch | master |
tag | trimmomatic |
commit | 036887883480fb8dbf372f2ce2eba35b6610a12c |
version (container hash) | 3d31fcee783dd9531a6152c7ef9bdd4257f4886313c578e913ddc2d03247ac90 |
build date | 2020-09-24T16:54:13.816Z |
size (MB) | 409.66796875 |
size (bytes) | 429568000 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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