ous-uio-bioinfo-core/containerised_ATACseq_pipeline:deeptools

$ singularity pull shub://ous-uio-bioinfo-core/containerised_ATACseq_pipeline:deeptools

Singularity Recipe

Bootstrap: docker
From: ubuntu:bionic-20191029

%environment
	CONDA="/usr/local/miniconda3/bin"
	export PATH=${CONDA}:${PATH}

%post
	apt-get update && apt-get install -y wget
	wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
	bash Miniconda3-latest-Linux-x86_64.sh -b -f -u -p /usr/local/miniconda3
	rm Miniconda3-latest-Linux-x86_64.sh

	CONDA="/usr/local/miniconda3/bin"
	export PATH=${CONDA}:${PATH}

	conda config --add channels bioconda

	conda install -y \
		deeptools=3.5.0 \
		python
            
	echo "PATH=${PATH}"

	mkdir /cluster /work /tsd /projects

%runscript
	echo "Running ubuntu bionic container with deeptools v3.5.0"
	exec /bin/bash "$@"

Collection


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Metrics

key value
id /containers/ous-uio-bioinfo-core-containerised_ATACseq_pipeline-deeptools
collection name ous-uio-bioinfo-core/containerised_ATACseq_pipeline
branch master
tag deeptools
commit addddc48c9f55ecbbbfb9b49b96e9b2f89f5aa34
version (container hash) d0f9860d51cf17f89f15204cc392ec95a052b4d3f7617bdab0655ab0cdacd2d0
build date 2020-10-07T20:03:28.396Z
size (MB) 896.78125
size (bytes) 940343296
SIF Download URL (please use pull with shub://)
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