ous-uio-bioinfo-core/containerised_ATACseq_pipeline:deeptools
$ singularity pull shub://ous-uio-bioinfo-core/containerised_ATACseq_pipeline:deeptools
Singularity Recipe
Bootstrap: docker
From: ubuntu:bionic-20191029
%environment
CONDA="/usr/local/miniconda3/bin"
export PATH=${CONDA}:${PATH}
%post
apt-get update && apt-get install -y wget
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -f -u -p /usr/local/miniconda3
rm Miniconda3-latest-Linux-x86_64.sh
CONDA="/usr/local/miniconda3/bin"
export PATH=${CONDA}:${PATH}
conda config --add channels bioconda
conda install -y \
deeptools=3.5.0 \
python
echo "PATH=${PATH}"
mkdir /cluster /work /tsd /projects
%runscript
echo "Running ubuntu bionic container with deeptools v3.5.0"
exec /bin/bash "$@"
Collection
- Name: ous-uio-bioinfo-core/containerised_ATACseq_pipeline
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/ous-uio-bioinfo-core-containerised_ATACseq_pipeline-deeptools |
collection name | ous-uio-bioinfo-core/containerised_ATACseq_pipeline |
branch | master |
tag | deeptools |
commit | addddc48c9f55ecbbbfb9b49b96e9b2f89f5aa34 |
version (container hash) | d0f9860d51cf17f89f15204cc392ec95a052b4d3f7617bdab0655ab0cdacd2d0 |
build date | 2020-10-07T20:03:28.396Z |
size (MB) | 896.78125 |
size (bytes) | 940343296 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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