ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE:trim

$ singularity pull shub://ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE:trim

Singularity Recipe

Bootstrap: docker

From: docker://continuumio/miniconda3:4.4.10

%files
    trim.yaml

%environment
    PATH="/opt/conda/envs/$(head -1 trim.yaml | cut -d' ' -f2)/bin:$PATH"

%post
    export PATH="/opt/conda/bin:$PATH"
    echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc
    echo "source activate $(head -1 trim.yaml | cut -d' ' -f2)" > ~/.bashrc
    /opt/conda/bin/conda env create -f trim.yaml

%runscript
    exec /bin/bash

Collection


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Metrics

key value
id /containers/ohsu-cedar-comp-hub-Bulk-RNA-seq-pipeline-SE-trim
collection name ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE
branch master
tag trim
commit 183376fa390e131e55749a0562fa7773323ed35f
version (container hash) 4d3bffa11564c5007f6b0307f064d18c
build date 2019-06-10T23:33:39.528Z
size (MB) 1371
size (bytes) 723021855
SIF Download URL (please use pull with shub://)
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Singularity Recipe Singularity Recipe on Datalad
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