ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE:trim
$ singularity pull shub://ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE:trim
Singularity Recipe
Bootstrap: docker
From: docker://continuumio/miniconda3:4.4.10
%files
trim.yaml
%environment
PATH="/opt/conda/envs/$(head -1 trim.yaml | cut -d' ' -f2)/bin:$PATH"
%post
export PATH="/opt/conda/bin:$PATH"
echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc
echo "source activate $(head -1 trim.yaml | cut -d' ' -f2)" > ~/.bashrc
/opt/conda/bin/conda env create -f trim.yaml
%runscript
exec /bin/bash
Collection
- Name: ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/ohsu-cedar-comp-hub-Bulk-RNA-seq-pipeline-SE-trim |
collection name | ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE |
branch | master |
tag | trim |
commit | 183376fa390e131e55749a0562fa7773323ed35f |
version (container hash) | 4d3bffa11564c5007f6b0307f064d18c |
build date | 2019-06-10T23:33:39.528Z |
size (MB) | 1371 |
size (bytes) | 723021855 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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