ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE:omic_qc_wf

$ singularity pull shub://ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE:omic_qc_wf

Singularity Recipe

Bootstrap: docker

From: continuumio/miniconda3

%files
    omic_qc_wf.yaml

%environment
    PATH=/opt/conda/envs/$(head -1 omic_qc_wf.yaml | cut -d' ' -f2)/bin:$PATH

%post
    apt-get update
    echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc
    echo "source activate $(head -1 omic_qc_wf.yaml | cut -d' ' -f2)" > ~/.bashrc
    /opt/conda/bin/conda env create -f omic_qc_wf.yaml

%runscript
    exec /bin/bash

Collection


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Metrics

key value
id /containers/ohsu-cedar-comp-hub-Bulk-RNA-seq-pipeline-SE-omic_qc_wf
collection name ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE
branch master
tag omic_qc_wf
commit 1c6a1d8ae0b9c224deea0d9548616560b5e0e09b
version (container hash) 314558c49dd92fdbfe2e32705b8cc588
build date 2019-05-29T03:17:47.664Z
size (MB) 3840
size (bytes) 1719283743
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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