ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE:deseq2_qc

$ singularity pull shub://ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE:deseq2_qc

Singularity Recipe

Bootstrap: docker

From: continuumio/miniconda3

%files
    deseq2_QC.yaml

%environment
    PATH=/opt/conda/envs/$(head -1 deseq2_QC.yaml | cut -d' ' -f2)/bin:$PATH

%post
    echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc
    echo "source activate $(head -1 deseq2_QC.yaml | cut -d' ' -f2)" > ~/.bashrc
    /opt/conda/bin/conda env create -f deseq2_QC.yaml

%runscript
    exec /bin/bash

Collection


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Metrics

key value
id /containers/ohsu-cedar-comp-hub-Bulk-RNA-seq-pipeline-SE-deseq2_qc
collection name ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE
branch master
tag deseq2_qc
commit 6cf58e9d84080805a3beaf08bca0e547abe6152c
version (container hash) 3675aeb8d40ccc3921f0089f8b7c3b1e
build date 2019-05-28T19:47:11.574Z
size (MB) 2164
size (bytes) 970600479
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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