ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE:deseq2
$ singularity pull shub://ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE:deseq2
Singularity Recipe
Bootstrap: docker
From: continuumio/miniconda3
%files
deseq2.yaml
%environment
PATH=/opt/conda/envs/$(head -1 deseq2.yaml | cut -d' ' -f2)/bin:$PATH
%post
echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc
echo "source activate $(head -1 deseq2.yaml | cut -d' ' -f2)" > ~/.bashrc
/opt/conda/bin/conda env create -f deseq2.yaml
%runscript
exec /bin/bash
Collection
- Name: ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/ohsu-cedar-comp-hub-Bulk-RNA-seq-pipeline-SE-deseq2 |
collection name | ohsu-cedar-comp-hub/Bulk-RNA-seq-pipeline-SE |
branch | master |
tag | deseq2 |
commit | 6cf58e9d84080805a3beaf08bca0e547abe6152c |
version (container hash) | 5df41eb82b4f2194fd4c17ea38658701 |
build date | 2019-05-28T19:46:49.857Z |
size (MB) | 2158 |
size (bytes) | 965554207 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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