nysbc/topaz:latest

$ singularity pull shub://nysbc/topaz:latest

Singularity Recipe

BootStrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum wget
%setup
    # commands to be executed on host outside container during bootstrap
%test
    # commands to be executed within container at close of bootstrap process
    exec /usr/bin/python3.5 --version
%environment
    export CUDA_HOME=/usr/local/cuda
    CUDA_LIB=$CUDA_HOME/lib64
    CUDA_INCLUDE=$CUDA_HOME/include
    CUDA_BIN=$CUDA_HOME/bin
    export LD_LIBRARY_PATH=$CUDA_LIB
    export PATH=$CUDA_BIN:$PATH
%runscript
    # commands to be executed when the container runs
    echo "LD_LIBRARY_PATH: $LD_LIBRARY_PATH"
    echo "PATH: $PATH"
    echo "Arguments received: $*"
    exec /usr/local/conda/bin/topaz "$@"
%post
    # commands to be executed inside container during bootstrap
    yum -y install epel-release
    yum -y install https://repo.ius.io/ius-release-el7.rpm
    yum -y install http://developer.download.nvidia.com/compute/cuda/repos/rhel7/x86_64/cuda-repo-rhel7-8.0.61-1.x86_64.rpm
    yum clean all && yum makecache
    yum -y install wget python35u python35u-pip libgomp cuda-runtime-8-0 bzip2
    ln -s /usr/local/cuda-8.0 /usr/local/cuda
    # install conda
    wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda.sh
    bash ~/miniconda.sh -b -p /usr/local/conda
    /usr/local/conda/bin/conda install -y numpy pandas scikit-learn
    # install topaz
    /usr/local/conda/bin/conda install  -y topaz cuda80 -c tbepler -c soumith
    # in-container bind points for shared filesystems
    mkdir -p /gpfs

Collection

• Name: nysbc/topaz
• License: GNU General Public License v3.0

Metrics

Feedback

Was this page helpful?

Glad to hear it! Please tell us how we can improve.

Sorry to hear that. Please tell us how we can improve.