nuitrcs/metapathways2:latest
$ singularity pull shub://nuitrcs/metapathways2:latest
Singularity Recipe
# Copyright (c) 2015-2016, Gregory M. Kurtzer. All rights reserved.
#
# "Singularity" Copyright (c) 2016, The Regents of the University of California,
# through Lawrence Berkeley National Laboratory (subject to receipt of any
# required approvals from the U.S. Dept. of Energy). All rights reserved.
BootStrap: debootstrap
OSVersion: xenial
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%runscript
echo "Please run this container image using \`singularity exec\`."
%environment
LANG=C.UTF-8
LC_ALL=C.UTF-8
%post
sed -i 's/$/ universe/' /etc/apt/sources.list
apt-get update
apt-get -y --allow-unauthenticated install vim build-essential wget git gfortran bison
apt-get -y --allow-unauthenticated install libibverbs-dev libibmad-dev libibumad-dev
apt-get -y --allow-unauthenticated install librdmacm-dev libmlx5-dev libmlx4-dev unzip
apt-get -y --allow-unauthenticated install libmotif-common csh tcsh
apt-get -y --allow-unauthenticated install curl
echo 'export PATH=/opt/conda/bin:$PATH' > /etc/profile.d/conda.sh && \
echo 'export XDG_RUNTIME_DIR=""' > /etc/profile.d/conda.sh && \
wget --quiet https://repo.continuum.io/archive/Anaconda3-5.2.0-Linux-x86_64.sh -O ~/anaconda.sh && \
/bin/bash ~/anaconda.sh -b -p /opt/conda && \
rm ~/anaconda.sh
/opt/conda/bin/conda install --yes dask distributed -c conda-forge
/opt/conda/bin/conda update --yes numba pandas h5py
/opt/conda/bin/conda clean --yes --all
cd /opt
git clone https://github.com/hallamlab/metapathways2.git
curl -L https://www.dropbox.com/s/ye3kpve041e0r39/MetaPathways_DBs.zip?dl=1 > MetaPathwaysDBs.zip
unzip MetaPathwaysDBs.zip
rm MetaPathwaysDBs.zip
echo 'export PATH=/opt/metapathways2/executables/ubuntu:/opt/conda/bin:$PATH' >> $SINGULARITY_ENVIRONMENT
Collection
- Name: nuitrcs/metapathways2
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/nuitrcs-metapathways2-latest |
collection name | nuitrcs/metapathways2 |
branch | master |
tag | latest |
commit | 8f5733bbc9c8196c52c11bdb767edac68c837e51 |
version (container hash) | cdbda2a340ad6b3fc3984ffdc3406a1c |
build date | 2018-09-21T20:39:55.034Z |
size (MB) | 4321 |
size (bytes) | 1593688095 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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