nickjer/singularity-r:latest
$ singularity pull shub://nickjer/singularity-r:latest
Singularity Recipe
BootStrap: docker
From: ubuntu:16.04
%labels
Maintainer Jeremy Nicklas
R_Version 3.6.2
%apprun R
exec R "${@}"
%apprun Rscript
exec Rscript "${@}"
%runscript
exec R "${@}"
%post
# Software versions
export R_VERSION=3.6.2
# Get dependencies
apt-get update
apt-get install -y --no-install-recommends \
locales
# Configure default locale
echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen
locale-gen en_US.utf8
/usr/sbin/update-locale LANG=en_US.UTF-8
export LC_ALL=en_US.UTF-8
export LANG=en_US.UTF-8
# Install R
echo "deb http://cran.r-project.org/bin/linux/ubuntu xenial-cran35/" > /etc/apt/sources.list.d/r.list
apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
apt-get update
apt-get install -y --no-install-recommends --allow-unauthenticated \
r-base=${R_VERSION}* \
r-base-core=${R_VERSION}* \
r-base-dev=${R_VERSION}* \
r-recommended=${R_VERSION}* \
r-base-html=${R_VERSION}* \
r-doc-html=${R_VERSION}* \
libcurl4-openssl-dev \
libssl-dev \
libxml2-dev \
libcairo2-dev \
libxt-dev \
# Add a default CRAN mirror
echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/lib/R/etc/Rprofile.site
# Add a directory for host R libraries
mkdir -p /library
echo "R_LIBS_SITE=/library:\${R_LIBS_SITE}" >> /usr/lib/R/etc/Renviron.site
# Clean up
rm -rf /var/lib/apt/lists/*
Collection
- Name: nickjer/singularity-r
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/nickjer-singularity-r-latest |
collection name | nickjer/singularity-r |
branch | master |
tag | latest |
commit | 293552151ec669928896871af79f596648abf568 |
version (container hash) | 2528af32d7ead298d4350dedb6b3ed3d |
build date | 2021-04-19T19:38:57.390Z |
size (MB) | 602.0 |
size (bytes) | 237121567 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.