nceglia/scrna-pipeline:latest

$ singularity pull shub://nceglia/scrna-pipeline:latest

Singularity Recipe

Bootstrap: docker
From: nceglia/scrna-pipeline:dev

%help
scrna pipeline meant to be run on juno mskcc.

%files
    lsf.template /codebase/cellranger-3.0.2/martian-cs/v3.2.0/jobmanagers/lsf.template
    run /bin/run

%environment
    export PATH=/codebase/cellranger-3.0.2:$PATH
    export PATH=$PATH:/common/juno/OS7/10.1/linux3.10-glibc2.17-x86_64/bin/
    export NPY_MKL_FORCE_INTEL=GNU

%post
    ln -s /usr/lib/R/lib /usr/local/lib/R/
    chmod 777 /bin/run
    chmod 775 /
    cd /codebase/SCRNApipeline; git pull
    

%runscript
    exec run "$@"

Collection


View on Datalad

Metrics

key value
id /containers/nceglia-scrna-pipeline-latest
collection name nceglia/scrna-pipeline
branch master
tag latest
commit a39650260bcb48a714149de17925eb0f77e0ee3d
version (container hash) 0b92acbece8c30541d0a7f922a7bd8fb
build date 2019-05-21T02:41:10.553Z
size (MB) 5663
size (bytes) 2514837535
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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