nceglia/scrna-pipeline:latest
$ singularity pull shub://nceglia/scrna-pipeline:latest
Singularity Recipe
Bootstrap: docker
From: nceglia/scrna-pipeline:dev
%help
scrna pipeline meant to be run on juno mskcc.
%files
lsf.template /codebase/cellranger-3.0.2/martian-cs/v3.2.0/jobmanagers/lsf.template
run /bin/run
%environment
export PATH=/codebase/cellranger-3.0.2:$PATH
export PATH=$PATH:/common/juno/OS7/10.1/linux3.10-glibc2.17-x86_64/bin/
export NPY_MKL_FORCE_INTEL=GNU
%post
ln -s /usr/lib/R/lib /usr/local/lib/R/
chmod 777 /bin/run
chmod 775 /
cd /codebase/SCRNApipeline; git pull
%runscript
exec run "$@"
Collection
- Name: nceglia/scrna-pipeline
- License: GNU General Public License v3.0
View on Datalad
Metrics
key | value |
---|---|
id | /containers/nceglia-scrna-pipeline-latest |
collection name | nceglia/scrna-pipeline |
branch | master |
tag | latest |
commit | a39650260bcb48a714149de17925eb0f77e0ee3d |
version (container hash) | 0b92acbece8c30541d0a7f922a7bd8fb |
build date | 2019-05-21T02:41:10.553Z |
size (MB) | 5663 |
size (bytes) | 2514837535 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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