natacha-beck/cbrain-containers-recipes:fsl_v5.0.9

$ singularity pull shub://natacha-beck/cbrain-containers-recipes:fsl_v5.0.9

Singularity Recipe

Bootstrap: docker
From: neurodebian:artful-non-free

#####################################################
#                                                   #
# MCIN (McGill Centre for Integrative Neuroscience) #
#                                                   #
# Singularity recipe for FSL to build a container   #
# used in CBRAIN (https://github.com/aces/cbrain)   #
#                                                   #
#####################################################

%labels
  Maintainer Natacha Beck

%help
This container executes any fsl-core command, and it contain all the fsl data too. 
For more information see FSL website: https://fsl.fmrib.ox.ac.uk/fsl/fslwiki

%post
  apt-get update
  apt-get install -y fsl-complete

%environment
  export FSLDIR=/usr/share/fsl/5.0 
  export FSLOUTPUTTYPE=NIFTI_GZ 
  export PATH=/usr/lib/fsl/5.0:$PATH 
  export FSLMULTIFILEQUIT=TRUE 
  export POSSUMDIR=/usr/share/fsl/5.0 
  export LD_LIBRARY_PATH=/usr/lib/fsl/5.0:$LD_LIBRARY_PATH 
  export FSLTCLSH=/usr/bin/tclsh 
  export FSLWISH=/usr/bin/wish 
  export FSLOUTPUTTYPE=NIFTI_GZ

Collection


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Metrics

key value
id /containers/natacha-beck-cbrain-containers-recipes-fsl_v5.0.9
collection name natacha-beck/cbrain-containers-recipes
branch fct
tag fsl_v5.0.9
commit 6970a17479639ba2f031ccc4272072327714fe0e
version (container hash) 9d4464ac3a9ffc431490daff5e3b11c7
build date 2018-06-26T19:08:46.243Z
size (MB) 1898
size (bytes) 1460404255
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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