myyoda/ohbm2018-training:heudiconvn
$ singularity pull shub://myyoda/ohbm2018-training:heudiconvn
Singularity Recipe
# Generated by Neurodocker version 0.4.0rc1
# Timestamp: 2018-06-10 03:00:13 UTC
#
# Thank you for using Neurodocker. If you discover any issues
# or ways to improve this software, please submit an issue or
# pull request on our GitHub repository:
#
# https://github.com/kaczmarj/neurodocker
Bootstrap: docker
From: neurodebian:latest
%post
export ND_ENTRYPOINT="/neurodocker/startup.sh"
apt-get update -qq
apt-get install -y -q --no-install-recommends \
apt-utils \
bzip2 \
ca-certificates \
curl \
locales \
unzip
apt-get clean
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
sed -i -e 's/# en_US.UTF-8 UTF-8/en_US.UTF-8 UTF-8/' /etc/locale.gen
dpkg-reconfigure --frontend=noninteractive locales
update-locale LANG="en_US.UTF-8"
chmod 777 /opt && chmod a+s /opt
mkdir -p /neurodocker
if [ ! -f "$ND_ENTRYPOINT" ]; then
echo '#!/usr/bin/env bash' >> "$ND_ENTRYPOINT"
echo 'set -e' >> "$ND_ENTRYPOINT"
echo 'if [ -n "$1" ]; then "$@"; else /usr/bin/env bash; fi' >> "$ND_ENTRYPOINT";
fi
chmod -R 777 /neurodocker && chmod a+s /neurodocker
apt-get update -qq
apt-get install -y -q --no-install-recommends \
pigz \
python3-pip \
python3-traits \
python3-scipy \
python3-setuptools \
python3-wheel \
python3-networkx \
dcm2niix
apt-get clean
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
apt-get update -qq
apt-get install -y -q --no-install-recommends \
make \
gcc \
sqlite3 \
libsqlite3-dev \
python3-dev \
libc6-dev
apt-get clean
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
pip3 install --system nipype https://github.com/mvdoc/dcmstack/archive/bf/importsys.zip https://github.com/nipy/heudiconv/archive/master.zip reprozip reprounzip
echo '{
\n "pkg_manager": "apt",
\n "instructions": [
\n [
\n "base",
\n "neurodebian:latest"
\n ],
\n [
\n "_header",
\n {
\n "version": "generic",
\n "method": "custom"
\n }
\n ],
\n [
\n "install",
\n [
\n "pigz",
\n "python3-pip",
\n "python3-traits",
\n "python3-scipy",
\n "python3-setuptools",
\n "python3-wheel",
\n "python3-networkx",
\n "dcm2niix"
\n ]
\n ],
\n [
\n "install",
\n [
\n "make",
\n "gcc",
\n "sqlite3",
\n "libsqlite3-dev",
\n "python3-dev",
\n "libc6-dev"
\n ]
\n ],
\n [
\n "run",
\n "pip3 install --system nipype https://github.com/mvdoc/dcmstack/archive/bf/importsys.zip https://github.com/nipy/heudiconv/archive/master.zip reprozip reprounzip"
\n ]
\n ]
\n}' > /neurodocker/neurodocker_specs.json
%environment
export LANG="en_US.UTF-8"
export LC_ALL="en_US.UTF-8"
export ND_ENTRYPOINT="/neurodocker/startup.sh"
%runscript
/neurodocker/startup.sh "$@"
Collection
- Name: myyoda/ohbm2018-training
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/myyoda-ohbm2018-training-heudiconvn |
collection name | myyoda/ohbm2018-training |
branch | master |
tag | heudiconvn |
commit | 43ca86a29d7b7cf7cd81ccc752a3127fcc034bd4 |
version (container hash) | 6a7ea11a59f298d1ebd8d55ff8210c5d |
build date | 2018-06-11T04:54:30.246Z |
size (MB) | 626 |
size (bytes) | 242393119 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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