mwanakijiji/lbti_altair_fizeau:latest

$ singularity pull shub://mwanakijiji/lbti_altair_fizeau:latest

Singularity Recipe

Bootstrap: docker
From: python:3.6.6

# copy files required for the app to run
%setup
  mkdir -p ${SINGULARITY_ROOTFS}/modules
  mkdir -p ${SINGULARITY_ROOTFS}/vol_c/180507_fizeau_altair

%files
  requirements.txt /
  altair_pipeline.py /
  # copy Python modules
  modules/*py /modules/
  # copy config file
  modules/*ini /modules/
  # kludge: this file is used as an initial template in the pipeline
  ## ## needs to change later!
  lm_180507_009030.fits /

%environment
  # set environment variable to retrieve new image each time
  export SINGULARITY_DISABLE_CACHE=True

%post
  # install pip
  apt-get update
  apt-get install -y python3-pip
  pip install -U pip
  # get dependencies
  pip install -r requirements.txt

# run the application (step not necessary if the verbose version
# of the command is in the PBS file)

%runscript
  echo "Runscript; Python version is"
  python --version
  #exec /bin/bash python3 /usr/src/app/altair_pipeline.py "$@"
%startscript
  echo "Startscript"
  #exec /bin/bash python3 /usr/src/app/altair_pipeline.py "$@"

Collection

• Name: mwanakijiji/lbti_altair_fizeau
• License: MIT License

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