motroy/singularity-removeHost:latest
$ singularity pull shub://motroy/singularity-removeHost:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
%environment
export PATH="/Software/bwa:/Databases/:$PATH"
%post
apt update && apt install -y git curl wget less locate unzip build-essential zlib1g-dev bedtools samtools
mkdir -p /Software/ && cd /Software/
git clone https://github.com/lh3/bwa.git
cd bwa
make
mkdir -p /Databases/ && cd /Databases
export PATH="/Software/bwa:/Databases/:$PATH"
#wget -q -O hg19_main_mask_ribo_animal_allplant_allfungus.fa.gz #https://zenodo.org/record/1208052/files/hg19_main_mask_ribo_animal_allplant_allfungus.fa.gz
#gunzip hg19_main_mask_ribo_animal_allplant_allfungus.fa.gz
#/Software/bwa/bwa index /Databases/hg19_main_mask_ribo_animal_allplant_allfungus.fa
Collection
- Name: motroy/singularity-removeHost
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/motroy-singularity-removeHost-latest |
collection name | motroy/singularity-removeHost |
branch | master |
tag | latest |
commit | 4e40943986fdadbceb65501aa62a4138526dc5dc |
version (container hash) | e815ba0bd53db2e51a09b1477ad7c71f |
build date | 2019-05-13T10:27:31.198Z |
size (MB) | 370 |
size (bytes) | 146628639 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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