motroy/singularity-poppunk:latest
$ singularity pull shub://motroy/singularity-poppunk:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:latest
%environment
export PATH="/miniconda/miniconda3/bin:/Software/PopPUNK/:/Software/PopPUNK/scripts:/Software/PopPUNK/PopPUNK/:$PATH"
export CONDARC="/.condarc"
%post
mkdir /miniconda && cd /miniconda
apt update && apt install -y git curl wget less locate build-essential openssh-server
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
./Miniconda3-latest-Linux-x86_64.sh -b -p /miniconda/miniconda3
/miniconda/miniconda3/bin/conda config --file /.condarc --add channels defaults
/miniconda/miniconda3/bin/conda config --file /.condarc --add channels bioconda
/miniconda/miniconda3/bin/conda config --file /.condarc --add channels conda-forge
export PATH="/miniconda/miniconda3/bin:$PATH"
export CONDARC="/.condarc"
/miniconda/miniconda3/bin/conda install -y poppunk
mkdir /Software && cd /Software
git clone https://github.com/johnlees/PopPUNK.git && cd PopPUNK
#/miniconda/miniconda3/bin/python3 poppunk-runner.py
cd test && /miniconda/miniconda3/bin/python3 run_test.py
/miniconda/miniconda3/bin/python3 clean_test.py
Collection
- Name: motroy/singularity-poppunk
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/motroy-singularity-poppunk-latest |
collection name | motroy/singularity-poppunk |
branch | master |
tag | latest |
commit | f1c535b821fd3119ffaed4dcea63267edf96722c |
version (container hash) | 5008453c36d2930448006acf4cc6bbdd |
build date | 2020-08-06T15:21:37.965Z |
size (MB) | 3087.0 |
size (bytes) | 1447620639 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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