motroy/singularity-kaiju-progen:latest
$ singularity pull shub://motroy/singularity-kaiju-progen:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:latest
%environment
export PATH="/Software/kaiju/bin:/Software/kaiju/databases$PATH"
%post
mkdir /Software && cd /Software
apt update && apt install -y git curl wget less locate build-essential openssh-server g++ libz-dev
git clone https://github.com/bioinformatics-centre/kaiju.git
cd kaiju/src && make
mkdir /Software/kaiju/databases && cd /Software/kaiju/databases
#wget http://kaiju.binf.ku.dk/database/kaiju_db_progenomes_2019-02-05.tgz
#tar xvf http://kaiju.binf.ku.dk/database/kaiju_db_progenomes_2019-02-05.tgz
export PATH="/Software/kaiju/bin:/Software/kaiju/databases$PATH"
Collection
- Name: motroy/singularity-kaiju-progen
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/motroy-singularity-kaiju-progen-latest |
collection name | motroy/singularity-kaiju-progen |
branch | master |
tag | latest |
commit | faf8ac1de208db84f1f133ddd63fe42fcdefccf6 |
version (container hash) | 76a5ad90e532a65f888473ed26575efe |
build date | 2020-07-10T21:12:41.711Z |
size (MB) | 468 |
size (bytes) | 164663327 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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