motroy/singularity-R-fastbaps:latest
$ singularity pull shub://motroy/singularity-R-fastbaps:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:latest
%environment
export PATH="/miniconda/miniconda3/bin:$PATH"
export CONDARC=/.condarc
%post
export CONDARC=/.condarc
mkdir /miniconda && cd /miniconda
apt update && apt install -y git curl wget less locate build-essential openssh-server apt-transport-https software-properties-common libssl-dev libcurl4-openssl-dev libmagick++-dev libgmp-dev
apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/'
apt update && apt install -y r-base
#wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
#chmod +x Miniconda3-latest-Linux-x86_64.sh
#./Miniconda3-latest-Linux-x86_64.sh -b -p /miniconda/miniconda3
#/miniconda/miniconda3/bin/conda update -n base conda && /miniconda/miniconda3/bin/conda config --set show_channel_urls True
#/miniconda/miniconda3/bin/conda config --file /.condarc --add channels defaults && /miniconda/miniconda3/bin/conda config --file /.condarc --add channels https://www.idiap.ch/software/bob/conda
#/miniconda/miniconda3/bin/conda install gridtk
R Rscript -e 'install.packages("ggplot2")'
R Rscript -e 'install.packages("devtools")'
R Rscript -e 'library("devtools"); install_github("gtonkinhill/fastbaps")'
R Rscript -e 'install.packages("ape")'
R Rscript -e 'install.packages("BiocManager");BiocManager::install("ggtree")'
R Rscript -e 'install.packages("phytools")'
R Rscript -e 'install.packages("rhierbaps")'
R Rscript -e 'install.packages("data.table")'
R Rscript -e 'install.packages("patchwork")'
R Rscript -e 'install.packages("stringr")'
R Rscript -e 'install.packages("dplyr")'
R Rscript -e 'install.packages("Matrix")'
R Rscript -e 'install.packages("ggbeeswarm")'
R Rscript -e 'install.packages("gplots")'
Collection
- Name: motroy/singularity-R-fastbaps
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/motroy-singularity-R-fastbaps-latest |
collection name | motroy/singularity-R-fastbaps |
branch | master |
tag | latest |
commit | b2d5afad6f8d775c280c91b48adb1d376fe71bec |
version (container hash) | d4065477e7427a655dcef29bee807d22 |
build date | 2019-05-27T02:23:41.859Z |
size (MB) | 1283 |
size (bytes) | 447926303 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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