motroy/singularity-CAT:latest
$ singularity pull shub://motroy/singularity-CAT:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:latest
%environment
export PATH="/Software/CAT/CAT_pack:/Software/Prodigal:/Software/diamond/bin:$PATH"
%post
apt update && apt install -y git curl wget less locate unzip build-essential python3 python3-dev python3-pip gcc cmake libpthread-stubs0-dev zlib1g-dev
mkdir -p /Software/ && cd /Software/
git clone --recursive https://github.com/dutilh/CAT.git
export PATH="/Software/CAT/CAT_pack:$PATH"
cd /Software/
git clone --recursive https://github.com/hyattpd/Prodigal.git
cd Prodigal
make install
export PATH="/Software/Prodigal:$PATH"
cd /Software/
git clone --recursive https://github.com/bbuchfink/diamond.git
cd diamond
mkdir bin && cd bin
cmake ..
make install
export PATH="/Software/diamond/bin:$PATH"
Collection
- Name: motroy/singularity-CAT
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/motroy-singularity-CAT-latest |
collection name | motroy/singularity-CAT |
branch | master |
tag | latest |
commit | d37b5cfbe43267a916c1edd4824f19d019ec2e34 |
version (container hash) | d711115e769a9842d216f293683b0fb9 |
build date | 2019-02-13T20:23:58.138Z |
size (MB) | 649 |
size (bytes) | 247033887 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.