motroy/singularity-CAT:latest

$ singularity pull shub://motroy/singularity-CAT:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu:latest

%environment
export PATH="/Software/CAT/CAT_pack:/Software/Prodigal:/Software/diamond/bin:$PATH"


%post
apt update && apt install -y git curl wget less locate unzip build-essential python3 python3-dev python3-pip gcc cmake libpthread-stubs0-dev zlib1g-dev
mkdir -p /Software/ && cd /Software/
git clone --recursive https://github.com/dutilh/CAT.git
export PATH="/Software/CAT/CAT_pack:$PATH"

cd /Software/
git clone --recursive https://github.com/hyattpd/Prodigal.git
cd Prodigal
make install
export PATH="/Software/Prodigal:$PATH"

cd /Software/
git clone --recursive https://github.com/bbuchfink/diamond.git
cd diamond
mkdir bin && cd bin
cmake ..
make install
export PATH="/Software/diamond/bin:$PATH"

Collection


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Metrics

key value
id /containers/motroy-singularity-CAT-latest
collection name motroy/singularity-CAT
branch master
tag latest
commit d37b5cfbe43267a916c1edd4824f19d019ec2e34
version (container hash) d711115e769a9842d216f293683b0fb9
build date 2019-02-13T20:23:58.138Z
size (MB) 649
size (bytes) 247033887
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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