mlell/singularity-r:latest
$ singularity pull shub://mlell/singularity-r:latest
Singularity Recipe
BootStrap: docker
From: debian:sid
%labels
Maintainer Moritz Lell
R_Version 4.0.2
%environment
export OMP_NUM_THREADS=1
%apprun R
exec R "${@}"
%apprun Rscript
exec Rscript "${@}"
%runscript
exec R "${@}"
%post
# Software versions
export R_VERSION=4.0.3
# Get dependencies
apt-get update
apt-get install -y --no-install-recommends \
locales curl gpg dirmngr gpg-agent libopenblas-dev
# Configure default locale
echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen
locale-gen en_US.utf8
/usr/sbin/update-locale LANG=en_US.UTF-8
export LC_ALL=en_US.UTF-8
export LANG=en_US.UTF-8
# Install R
apt-get update
apt-get install -y --no-install-recommends \
r-base=${R_VERSION}* \
r-base-core=${R_VERSION}* \
r-base-dev=${R_VERSION}* \
r-recommended=${R_VERSION}* \
r-base-html=${R_VERSION}* \
r-doc-html=${R_VERSION}* \
libpython3-all-dev \
libcurl4-openssl-dev \
libssl-dev \
libxml2-dev \
libcairo2-dev \
libxt-dev \
pandoc \
git \
vim \
emacs \
nano \
graphviz \
procps \
libnetcdf18 libnetcdf-dev
# Add a default CRAN mirror
echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/lib/R/etc/Rprofile.site
# Set default python version
ln -s python3 /usr/bin/python
# Clean up
rm -rf /var/lib/apt/lists/*
Collection
- Name: mlell/singularity-r
- License: Other
View on Datalad
Metrics
key | value |
---|---|
id | /containers/mlell-singularity-r-latest |
collection name | mlell/singularity-r |
branch | master |
tag | latest |
commit | 799fcd185848a04e103a9a0eae457ec4c22c568a |
version (container hash) | a8c5a6010f3934af032edfca440280bc |
build date | 2021-02-03T18:16:49.316Z |
size (MB) | 2564.0 |
size (bytes) | 804618271 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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