mikemhenry/cme-lab-images:base
$ singularity pull shub://mikemhenry/cme-lab-images:base
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
%help
Base image used in CME-Lab workflows.
This image sets up conda/python
http://coen.boisestate.edu/cmelab/
%setup
%files
%labels
Maintainer Mike Henry
Maintainer_Email mikehenry@boisestate.edu
Version v0.01
%environment
CONDA_DIR="/opt/conda"
PATH="$CONDA_DIR/bin:$PATH"
export PATH
%post
# Build envs
CONDA_VERSION="4.5.4"
CONDA_DIR="/opt/conda"
CONDA_MD5_CHECKSUM="a946ea1d0c4a642ddf0c3a26a18bb16d"
# conda deps
apt update
apt install --no-install-recommends -y wget tar ca-certificates bzip2
apt clean
rm -rf /var/lib/apt/lists/*
# install conda
mkdir -p "$CONDA_DIR"
wget "http://repo.continuum.io/miniconda/Miniconda3-${CONDA_VERSION}-Linux-x86_64.sh" -O miniconda.sh
echo "$CONDA_MD5_CHECKSUM miniconda.sh" | md5sum -c
bash miniconda.sh -f -b -p "$CONDA_DIR"
echo "export PATH=$CONDA_DIR/bin:\$PATH" > /etc/profile.d/conda.sh
rm miniconda.sh
%runscript
%test
CONDA_DIR="/opt/conda"
PATH="$CONDA_DIR/bin:$PATH"
command -v conda
command -v python
conda list
Collection
- Name: mikemhenry/cme-lab-images
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/mikemhenry-cme-lab-images-base |
collection name | mikemhenry/cme-lab-images |
branch | master |
tag | base |
commit | f510d17b5d0321d152d1bd562734ecd0ec9df2e9 |
version (container hash) | b545442d332e079e6c288d1048318061 |
build date | 2018-07-02T22:28:01.278Z |
size (MB) | 385 |
size (bytes) | 183648287 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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