mih/ohbm2018-training:heudiconv

$ singularity pull shub://mih/ohbm2018-training:heudiconv

Singularity Recipe

Bootstrap:docker
From:neurodebian:latest

%post
    echo "Configuring the environment"
    apt-get -y update

    # setup the container sources themselves
    apt-get -y install eatmydata
    # proper locale setup for UTF8
    eatmydata apt-get -y install locales
    echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen
    locale-gen

    # bare essentials to pull everything else in
    eatmydata apt-get -y install --no-install-recommends python3-pip python3-setuptools python3-wheel wget

    # non-python and a few other bits to avoid having to build everything
    eatmydata apt-get -y install --no-install-recommends dcm2niix python3-numpy python3-six python3-traits python3-scipy pigz

    # little dance to avoid having to install the entire git stack
    # fancified dcmstack version needed
    wget https://github.com/mvdoc/dcmstack/archive/bf/importsys.zip
    pip3 install --system importsys.zip
    rm -f importsys.zip

    wget https://github.com/nipy/heudiconv/archive/master.zip
    pip3 install --system master.zip
    rm -f master.zip

    # clean up
    apt-get clean

Collection


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Metrics

key value
id /containers/mih-ohbm2018-training-heudiconv
collection name mih/ohbm2018-training
branch master
tag heudiconv
commit 26e3d45906599405744cc3c53b163bf0318b415f
version (container hash) 7b4fbd4f19d91225dc2aa3b7e3e78bff
build date 2018-05-20T23:46:11.258Z
size (MB) 457
size (bytes) 168771615
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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