mih/ohbm2018-training:heudiconv
$ singularity pull shub://mih/ohbm2018-training:heudiconv
Singularity Recipe
Bootstrap:docker
From:neurodebian:latest
%post
echo "Configuring the environment"
apt-get -y update
# setup the container sources themselves
apt-get -y install eatmydata
# proper locale setup for UTF8
eatmydata apt-get -y install locales
echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen
locale-gen
# bare essentials to pull everything else in
eatmydata apt-get -y install --no-install-recommends python3-pip python3-setuptools python3-wheel wget
# non-python and a few other bits to avoid having to build everything
eatmydata apt-get -y install --no-install-recommends dcm2niix python3-numpy python3-six python3-traits python3-scipy pigz
# little dance to avoid having to install the entire git stack
# fancified dcmstack version needed
wget https://github.com/mvdoc/dcmstack/archive/bf/importsys.zip
pip3 install --system importsys.zip
rm -f importsys.zip
wget https://github.com/nipy/heudiconv/archive/master.zip
pip3 install --system master.zip
rm -f master.zip
# clean up
apt-get clean
Collection
- Name: mih/ohbm2018-training
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/mih-ohbm2018-training-heudiconv |
collection name | mih/ohbm2018-training |
branch | master |
tag | heudiconv |
commit | 26e3d45906599405744cc3c53b163bf0318b415f |
version (container hash) | 7b4fbd4f19d91225dc2aa3b7e3e78bff |
build date | 2018-05-20T23:46:11.258Z |
size (MB) | 457 |
size (bytes) | 168771615 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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